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Nucleus and DNA Replication

Author: Sophia

what's covered
In this lesson, you will learn about the nucleus, the organization of DNA inside the cell, and how DNA is replicated. Specifically, this lesson will cover:

Table of Contents

1. Nucleus

The central and largest organelle of the cell is the nucleus. The nucleus (cell) is a membranous organelle that is generally considered the control center of the cell because it stores the cell’s DNA: genetic instructions for manufacturing proteins.

This diagram shows an animal cell with all the intracellular organelles labeled.
Prototypical Human Cell - While this image is not indicative of any one particular human cell, it is a prototypical example of a cell containing the primary organelles and internal structures.

Interestingly, some cells in the body, such as muscle cells, contain more than one nucleus, which is known as multinucleated. Other cells, such as mammalian red blood cells (RBCs), do not contain nuclei at all. RBCs eject their nuclei as they mature, making space for the large numbers of proteins that carry oxygen throughout the body. Without nuclei, the life span of RBCs is short, and so the body must produce new ones constantly.

Light micrograph shows a muscle cell with multiple nuclei.
Multinucleate Muscle Cell - Unlike cardiac muscle cells and smooth muscle cells, which have a single nucleus, a skeletal muscle cell contains many nuclei, and is referred to as “multinucleated.” These muscle cells are long and fibrous (often referred to as muscle fibers). During development, many smaller cells fuse to form a mature muscle fiber. The nuclei of the fused cells are conserved in the mature cell thus imparting a multinucleate characteristic to mature muscle cells.

This set of micrographs shows a red blood cell extruding its nucleus. In the left panel, the nucleus is partially extruded from the red blood cell, and in the right panel, the nucleus is completely extruded from the cell.
Red Blood Cell Extruding - Its Nucleus Mature red blood cells lack a nucleus. As they mature, erythroblasts extrude their nucleus, making room for more hemoglobin. The two panels here show an erythroblast (red) before and after ejecting its nucleus (black & white), respectively. Modification of micrograph provided by the Regents of University of Michigan Medical School © 2012


Inside the nucleus lies the blueprint that dictates everything a cell will do and all of the products it will make. This information is stored within DNA. The nucleus sends “commands” to the cell via molecular messengers that translate the information from DNA. Each cell in your body (with the exception of germ/sex cells) contains the complete set of your DNA. When a cell divides, the DNA must be replicated so that each new cell receives a full complement of DNA. The following section will explore the structure of the nucleus and its contents, as well as the process of DNA replication.

term to know
Nucleus (cell)
A membranous organelle which stores the cell’s DNA; the cell’s “control center”

2. Organization of the Nucleus and Its DNA

Similar to the mitochondria, the nucleus is surrounded by two phospholipid membranes, an inner and outer membrane, separated by a thin fluid-filled space. In the case of the nucleus, this membrane is called the nuclear envelope. Spanning these two bilayers are nuclear pores. A nuclear pore is a tiny passageway for the passage of materials (proteins, RNA, and solutes) between the nucleus and the cytoplasm. Proteins, called pore complexes, line the nuclear pores and regulate the passage of materials into and out of the nucleus.

This figure shows the structure of the nucleus. The nucleolus is inside the nucleus, surrounded by the chromatin and covered by the nuclear envelope.
The Nucleus - The nucleus is the control center of the cell. The nucleus of living cells contains the genetic material that determines the entire structure and function of that cell.

Inside the nuclear envelope is a gel-like nucleoplasm with solutes that include the building blocks of nucleic acids used to make DNA and RNA. There also can be a dark-staining mass often visible under a simple light microscope, called a nucleolus (plural = nucleoli). The nucleolus is a region of the nucleus that is responsible for manufacturing the RNA necessary for the construction of ribosomes. Once synthesized, newly made ribosomal subunits exit the cell’s nucleus through the nuclear pores.

The genetic instructions that are used to build and maintain an organism are arranged in an orderly manner in strands of DNA and stored inside the nucleus. In order to fit all of these coded instructions into such a small space, DNA has a highly coordinated method of compacting to limit the space it takes up.

key concept
When fully formed, the two strands of DNA (connected to one another by hydrogen bonds) twist into their natural spiral structure called a double helix which resembles a twisted ladder. DNA in this form is the most open, accessible, and takes up a significant amount of space. Therefore, it is only found in this form when the code is being accessed. When not in use, DNA is compacted into a series of forms that take up less space.

  • First, double helix DNA is wrapped around a group of proteins called histones to form a structure called a nucleosome. This is commonly referred to as the “beads on a string” structure of DNA because it forms balls every so often along the string of DNA.
  • DNA with nucleosomes wraps around itself to form compact coils called chromatin.
  • Chromatin wraps around itself creating the most compact form of DNA called a chromosome. Commonly referred to as the “coil of coils” structure of DNA, this is the form that most DNA spends the greatest amount of time in. All of the DNA in a human cell forms 23 pairs, or 46 total, chromosomes.
This diagram shows the macrostructure of DNA. A chromosome and its component chromatin are shown to expand into nucleosomes with histones, which further unravel into a DNA helix and finally into a DNA ladder.
DNA Macrostructure - Strands of DNA are wrapped around supporting histones to form nucleosomes. These structures are increasingly bundled and condensed into chromatin, which is packed tightly into chromosomes when the cell is ready to divide.


did you know
The human genetic code consists of a little over 3 billion base pairs—that’s 3,000,000,000 sets of A-T and C-G nucleic acid pairings. If the DNA from one cell was uncoiled and placed in a straight line, it would be 2.0 meters (~6.6 feet) long. If the DNA from every cell in one human being was placed in a straight line, it would be approximately 20 trillion meters (~12.5 billion miles). That amount of DNA would span our solar system twice, make 67 round trips to the sun and back, or encircle the Earth’s equator more than 500,000 times.

All of that DNA fits into the nucleus which is 6 micrometers (microns) in diameter. That’s approximately 1/10th of the thickness of a piece of copy or printer paper—really small. This is all possible thanks to DNA compaction.

terms to know
Nuclear Envelope
The double phospholipid bilayer membrane that surrounds the nucleus.
Nuclear Pore
A passageway in the nuclear envelope formed by proteins for the transport of materials between the nucleus and the cytoplasm.
Nucleolus
A dark staining region of the nucleus that is responsible for manufacturing the RNA necessary for the construction of ribosomes.
Double Helix
Double-stranded DNA in its natural and open twisted ladder form.
Nucleosome
Double helix DNA wrapped around histones to form the “bead on a string” form of DNA.
Chromatin
Nucleosomes wrapped around themselves to form the “coiled” form of DNA.
Chromosome
Chromatin wrapped around itself to form the most compact, “coiled coil” form of DNA.

3. DNA Replication

In order for an organism to grow, develop, and maintain its health, cells must reproduce themselves by dividing to produce two new cells. In order for each cell to have the full set of coded genetic instructions, each cell must contain a full complement of DNA as found in the original cell. Billions of new cells are produced in an adult human every day. Only very few cell types in the body do not divide—including nerve cells, skeletal muscle fibers, and cardiac muscle cells.

Recall that each DNA strand is a polymer of nucleotides and is formed by a deoxyribose sugar and phosphate backbone with bases projecting inward. The two sides of the twisted ladder that double helix DNA forms are not identical, but are complementary. These two backbones are bonded to each other across pairs of protruding bases, each bonded pair forming one “rung,” or cross member. The four DNA bases are adenine (A), thymine (T), cytosine (C), and guanine (G). Because of their shape and charge, the two bases that compose a pair always bond together. Adenine always binds with thymine, and cytosine always binds with guanine. The particular sequence of bases along the DNA molecule determines the genetic code. Therefore, if the two complementary strands of DNA were pulled apart, you could infer the order of the bases in one strand from the bases in the other, complementary strand. For example, if one strand has a region with the sequence AGTGCCT, then the sequence of the complementary strand would be TCACGGA.

This figure shows the DNA double helix on the top left panel. The different nucleotides are color-coded. In the top right panel, the interaction between the nucleotides through the hydrogen bonds and the location of the sugar-phosphate backbone is shown. In the bottom panel, the structure of a nucleotide is described in detail.
Molecular Structure of DNA - The DNA double helix is composed of two complementary strands. The strands are bonded together via their nitrogenous base pairs using hydrogen bonds.


DNA replication is the process of making a copy of DNA that occurs before cell division can take place. After a great deal of debate and experimentation, the general method of DNA replication was deduced in 1958 by two scientists in California: Matthew Meselson and Franklin Stahl. This method is illustrated and described below.

This image shows the process of DNA replication. A chromosome is shown expanding into the original template DNA and unwinding at the replication fork. The helicase is present at the replication fork. DNA polymerases are shown adding nucleotides to the leading and lagging strands.
DNA Replication - DNA replication faithfully duplicates the entire genome of the cell. During DNA replication, a number of different enzymes work together to pull apart the two strands so each strand can be used as a template to synthesize new complementary strands. The two new daughter DNA molecules each contain one pre-existing strand and one newly synthesized strand. Thus, DNA replication is said to be “semiconservative.”


Stage 1: Initiation. The two complementary strands are separated, much like unzipping a zipper. Special enzymes, including helicase, untwist and separate the two strands of DNA.

Stage 2: Elongation. Each strand becomes a template along which a new complementary strand is built. DNA polymerase brings in the correct bases to complement the template strand, synthesizing a new strand base by base. A DNA polymerase is an enzyme that adds free nucleotides to the end of a chain of DNA which makes a new double strand. This growing strand continues to be built until it has fully complemented the template strand.

Stage 3: Termination. Once the two original strands are bound to their own, finished, complementary strands, DNA replication is stopped and the two new identical DNA molecules are complete.

Each new DNA molecule contains one strand from the original molecule and one newly synthesized strand. The term for this mode of replication is “semiconservative,” because half of the original DNA molecule is conserved in each new DNA molecule. This process continues until the cell’s entire genome, the entire complement of an organism’s DNA, is replicated. As you might imagine, it is very important that DNA replication takes place precisely so that new cells in the body contain the exact same genetic material as their parent cells. Mistakes made during DNA replication, such as the accidental addition of an inappropriate nucleotide, have the potential to render a portion of the genetic code dysfunctional or useless. Fortunately, there are mechanisms in place to minimize such mistakes. A DNA proofreading process enlists the help of special enzymes that scan the newly synthesized molecule for mistakes and corrects them. Once the process of DNA replication is complete, the cell is ready to divide. You will explore the process of cell division later in a future lesson.

terms to know
DNA Replication
The process of making a copy of DNA.
DNA Polymerase
An enzyme that adds free nucleotides to the end of a chain of DNA.
Genome
The entire complement of an organism’s DNA.

summary
In this lesson, you learned that the central and largest organelle of the cell is the nucleus, which contains DNA. You learned that the organization of the nucleus includes at least one nucleolus surrounded by a nuclear envelope with nuclear pores. You also learned how double helix DNA can be compacted to form chromosomes that fit inside the nucleus. Lastly, you learned how DNA can be duplicated through DNA replication to make sure each new cell in cell division has a full genome.

Source: THIS TUTORIAL HAS BEEN ADAPTED FROM OPENSTAX “ANATOMY AND PHYSIOLOGY 2E.” ACCESS FOR FREE AT HTTPS://OPENSTAX.ORG/DETAILS/BOOKS/ANATOMY-AND-PHYSIOLOGY-2E. LICENSE: CC ATTRIBUTION 4.0 INTERNATIONAL.

Terms to Know
Chromatin

Nucleosomes wrapped around themselves to form the “coiled” form of DNA.

Chromosome

Chromatin wrapped around itself to form the most compact, “coiled coil” form of DNA.

DNA Polymerase

An enzyme that adds free nucleotides to the end of a chain of DNA.

DNA Replication

The process of making a copy of DNA.

Double Helix

Double stranded DNA in its natural and open twisted ladder form.

Genome

The entire complement of an organism’s DNA.

Nuclear Envelope

The double phospholipid bilayer membrane that surrounds the nucleus.

Nuclear Pore

A passageway in the nuclear envelope formed by proteins for the transport of materials between the nucleus and the cytoplasm.

Nucleolus

A dark staining region of the nucleus that is responsible for manufacturing the RNA necessary for construction of ribosomes.

Nucleosome

Double helix DNA wrapped around histones to form the “bead on a string” form of DNA.

Nucleus (cell)

A membranous organelle which stores the cell’s DNA; the cell’s “control center”